PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1141s0040.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 446aa    MW: 48193.5 Da    PI: 8.5093
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1141s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.6e-115480127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                            ++++ C+++ rtG C++G++C+F+H+p
  SapurV1A.1141s0040.1.p 54 PGEPDCSYYIRTGLCRFGATCRFNHPP 80
                            5789*********************97 PP

2zf-CCCH38.81.5e-12101125327
                             S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                             +++C+++++tGtCk+G++CkF+H++
  SapurV1A.1141s0040.1.p 101 QPECQYYLKTGTCKFGATCKFHHPR 125
                             799********************96 PP

3zf-CCCH36.96.2e-12149171527
                             --SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                             +C +++rtG+Ck+G++CkF+H++
  SapurV1A.1141s0040.1.p 149 ECAYYLRTGQCKFGSTCKFHHPQ 171
                             7********************97 PP

4zf-CCCH37.93e-12307332227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                             ++++C+f+++tG Ck+G+ C+F+H++
  SapurV1A.1141s0040.1.p 307 GQPECQFYMKTGDCKFGAVCRFHHPR 332
                             5799********************96 PP

5zf-CCCH35.91.3e-11353378227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                             +++ C f++r+G+Ck+G++CkF H++
  SapurV1A.1141s0040.1.p 353 GEPSCIFYSRYGICKFGPSCKFDHPM 378
                             7889********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5875381IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-55380IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-85580IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-55881IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-45979IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15998126IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-698125IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-10101125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6102127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-5104125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.065144172IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-5144171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6148172IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9149171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4150170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.967305333IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5305332IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-9308332IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-6308335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-5311333IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.479351379IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5351378IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-9353378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-5355378IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MDFDAGIPMS RGGGGLPDVT EGTSMSQSLS EDAMWQMNLR SSETMDAGPY PVRPGEPDCS  60
YYIRTGLCRF GATCRFNHPP NRKLAIAAAR MKGEFPERIG QPECQYYLKT GTCKFGATCK  120
FHHPRDKAGI SGRVSLNILG YPLQPNEIEC AYYLRTGQCK FGSTCKFHHP QPTNMMVPLR  180
GSPIYPTVSS PTTPGQQSYP GGLATTWSRA SFITSPRWQA PSSYTPLILP QGVVSVPGWN  240
AYSGQLGSVS SPESQQQTGN SQIYGNLRQS ESVNAGSQGA FSPYRSGSAP LGLYALQRES  300
VFPERLGQPE CQFYMKTGDC KFGAVCRFHH PRERLIPAPD CVLSPLGLPL RPGEPSCIFY  360
SRYGICKFGP SCKFDHPMGI FTYNLTASSS ADAPVRRLLG SSSGSAGLTL SSEGLVEAGA  420
TKPRRLSLSE PRQMPPGDDN IDTGG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164701e-137AC216470.1 Populus trichocarpa clone POP037-N11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014133.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLB9IQ140.0B9IQ14_POPTR; Zinc finger family protein
STRINGVIT_04s0023g00370.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1